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Open Source Better Science
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Open Source Better Science

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@ropensci @conda-forge @openbiox @OncoHarmony-Network @Traitome @oxo-flow-community

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ShixiangWang/README.md

Dr. Shixiang Wang | Associate Professor at CSU

Leader of Laboratory of In Silico Oncology and Medicine, and

co-leadership of OncoHarmony Network with Prof. Jian-Guo Zhou.

About

🔬 Research Focus: Bioinformatics · Cancer Genomics · Multi-omics Analysis
🛠️ Development: Developer specializing in open-source tools for reproducible bioinformatics
🎯 Mission: Building accessible workflows and packages for clinical and research bioinformatics

Resources & Links:

Featured Projects

🌟 UCSCXenaShiny — Interactive Shiny app for exploring UCSC Xena datasets
🔧 UCSCXenaTools — R toolkit to access and manipulate UCSC Xena data
⚗️ bregr — Selected research software from WangLab @ CSU
📰 weekly — Openbiox Weekly: curated bioinformatics news and resources
🎓 Tech-Workshop — OncoHarmony Network workshops and teaching materials

Connect with Me

💬 Discussion & Support: GitHub Discussions | Email

bilibili wechat zhihu twitter scholar


GitHub Stats

🐱 My GitHub Data

📦 5.0 MB Used in GitHub's Storage

🏆 6,577 Contributions in the Year 2026

🚫 Not Opted to Hire

📜 101 Public Repositories

🔑 31 Private Repositories

I'm an Early 🐤

🌞 Morning                9536 commits        █████░░░░░░░░░░░░░░░░░░░░   18.36 % 
🌆 Daytime                16984 commits       ████████░░░░░░░░░░░░░░░░░   32.71 % 
🌃 Evening                15761 commits       ████████░░░░░░░░░░░░░░░░░   30.35 % 
🌙 Night                  9649 commits        █████░░░░░░░░░░░░░░░░░░░░   18.58 % 

📅 I'm Most Productive on Friday

Monday                   7890 commits        ████░░░░░░░░░░░░░░░░░░░░░   15.19 % 
Tuesday                  6714 commits        ███░░░░░░░░░░░░░░░░░░░░░░   12.93 % 
Wednesday                7341 commits        ████░░░░░░░░░░░░░░░░░░░░░   14.14 % 
Thursday                 7789 commits        ████░░░░░░░░░░░░░░░░░░░░░   15.00 % 
Friday                   8397 commits        ████░░░░░░░░░░░░░░░░░░░░░   16.17 % 
Saturday                 7032 commits        ███░░░░░░░░░░░░░░░░░░░░░░   13.54 % 
Sunday                   6767 commits        ███░░░░░░░░░░░░░░░░░░░░░░   13.03 % 

🤖 AI Coding This Week

No AI Coding Activity Tracked This Week

I Mostly Code in R

R                        101 repos           ███████████░░░░░░░░░░░░░░   45.91 % 
Python                   33 repos            ████░░░░░░░░░░░░░░░░░░░░░   15.00 % 
HTML                     25 repos            ███░░░░░░░░░░░░░░░░░░░░░░   11.36 % 
Rust                     9 repos             █░░░░░░░░░░░░░░░░░░░░░░░░   04.09 % 
SCSS                     3 repos             ░░░░░░░░░░░░░░░░░░░░░░░░░   01.36 % 

Last Updated on 29/10/2026 23:38:18 UTC

These Readme stats are generated using github action awesome-readme-stats


NOTE: Top languages does not indicate my skill level or anything like that. It is just a metric of which languages have been hosted by me on GitHub based on the usage across repositories.

Pinned Loading

  1. openbiox/UCSCXenaShiny openbiox/UCSCXenaShiny Public

    📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/; Book: https://lishensuo.github.io/UCSCXenaShiny_Book; App online: https://shiny.zhoulab.ac.cn/UCSCXenaShiny,…

    R 104 34

  2. sigminer sigminer Public

    🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html

    R 163 20

  3. Traitome/oxo-flow Traitome/oxo-flow Public

    A Rust-native bioinformatics pipeline engine with AI Companion

    Rust 25 3

  4. WangLabCSU/bregr WangLabCSU/bregr Public

    Easy and Efficient Batch Processing of Regression Models in R

    R 15 3

  5. WangLabCSU/otk WangLabCSU/otk Public

    Python

  6. pybook pybook Public

    《交互的Python:数据分析入门》

    134 16