Skip to content
@flatironinstitute

Flatiron Institute

Popular repositories Loading

  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 741 399

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3 on the CPU or GPU

    C++ 450 112

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 354 90

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 261 151

  5. FMM3D FMM3D Public

    Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in thre…

    Fortran 165 57

  6. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 160 96

Repositories

Showing 10 of 247 repositories
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3 on the CPU or GPU

    flatironinstitute/finufft's past year of commit activity
    C++ 450 112 39 (4 issues need help) 13 Updated Nov 1, 2026
  • software-citation-station Public

    A website for making citing software used in your research quick and easy

    flatironinstitute/software-citation-station's past year of commit activity
    TeX 31 5 5 (1 issue needs help) 0 Updated Nov 1, 2026
  • nemos-documentation Public

    Host nemos docs build

    flatironinstitute/nemos-documentation's past year of commit activity
    0 MIT 0 0 0 Updated Nov 1, 2026
  • jax-finufft Public

    JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library

    flatironinstitute/jax-finufft's past year of commit activity
    C++ 144 Apache-2.0 12 9 6 Updated Nov 1, 2026
  • nifty-ls Public

    A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!

    flatironinstitute/nifty-ls's past year of commit activity
    Python 54 Apache-2.0 8 10 3 Updated Nov 1, 2026
  • slurm Public Forked from SchedMD/slurm

    Slurm: A Highly Scalable Workload Manager

    flatironinstitute/slurm's past year of commit activity
    C 1 918 0 0 Updated Oct 31, 2026
  • numbl Public

    Numerical computing environment that aims to be compatible with Matlab

    flatironinstitute/numbl's past year of commit activity
    TypeScript 14 Apache-2.0 3 12 4 Updated Oct 30, 2026
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos's past year of commit activity
    Python 146 MIT 27 121 (1 issue needs help) 9 Updated Oct 30, 2026
  • walnutpie Public

    Within-orbit Adaptive Leapfrog No-U-Turn Sampler

    flatironinstitute/walnutpie's past year of commit activity
    C++ 66 MIT 4 14 (1 issue needs help) 3 Updated Oct 29, 2026
  • psyphy Public

    Active-learning-driven adaptive experiments in psychophysics.

    flatironinstitute/psyphy's past year of commit activity
    Python 5 MIT 3 34 (1 issue needs help) 2 Updated Oct 29, 2026
View all repositories